Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF749_chr19_57430325_57452101	0/0	t0011	1871	5	5	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0012	1871	5	1	0	1	0	3	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0013	1871	4	4	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0014	1871	3	2	1	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0015	1871	2	2	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0016	1871	2	0	0	0	0	2	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0017	1871	2	2	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0018	1872	2	2	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0019	1871	2	2	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0020	1871	2	2	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0021	1871	2	2	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0022	1871	2	2	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0023	1871	1	0	1	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0024	1871	1	1	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0025	1871	1	1	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0026	1871	1	0	1	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0027	1871	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0028	1871	1	1	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0029	1872	1	1	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0030	1871	1	0	0	0	1	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0031	1871	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0032	1871	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0033	1871	1	0	0	0	0	1	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0034	1871	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0035	1871	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0036	1871	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0037	1871	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0038	1871	1	1	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0039	1871	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0040	1871	1	1	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0041	1871	1	0	1	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0042	1871	1	1	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF74_chr22_20389151_20413455	0/1	t0001	1966	133	43	23	40	6	20	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	1/0	t0002	1966	128	4	30	70	7	16	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0003	1966	67	0	5	62	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0004	1966	35	23	8	0	2	2	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0005	1966	26	9	2	12	1	2	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0006	1966	7	7	0	0	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0007	1966	6	6	0	0	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0008	1966	4	0	0	4	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0009	1966	2	2	0	0	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0010	1966	2	0	2	0	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0011	1966	1	0	0	1	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0012	1966	1	0	0	1	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0013	1966	1	0	0	1	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0014	1966	1	0	0	1	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0015	1966	1	0	0	0	1	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0016	1966	1	0	0	0	0	1	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0017	1966	1	0	0	1	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0018	1977	1	0	0	1	0	0	copy fasta	ZNF74	chr22	20389151	20413455