Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF74_chr22_20389151_20413455	0/0	t0019	1966	1	0	0	1	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0020	1966	1	0	0	1	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0021	1966	1	0	0	0	1	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	t0022	1966	1	0	0	0	0	1	copy fasta	ZNF74	chr22	20389151	20413455
ZNF750_chr17_82824434_82845022	0/0	t0001	987	150	36	25	70	6	13	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	t0002	983	143	21	23	78	8	13	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	t0003	987	53	12	23	16	2	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/1	t0004	983	35	0	6	13	2	13	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	1/0	t0005	987	29	23	5	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	t0006	979	6	0	0	3	0	3	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	t0007	987	3	3	0	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	t0008	987	2	2	0	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	t0009	987	1	0	0	1	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	t0010	983	1	0	0	1	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	t0011	983	1	0	0	1	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	t0012	983	1	0	0	1	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	t0013	987	1	1	0	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF75A_chr16_3300497_3323851	1/1	t0001	1246	321	51	51	168	12	37	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0002	1246	48	23	15	4	3	3	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0003	1246	10	10	0	0	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0004	1247	5	5	0	0	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0005	1246	5	0	5	0	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0006	1246	2	2	0	0	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0007	1246	2	0	0	0	0	2	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0008	1246	2	0	1	0	0	1	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0009	1246	1	0	0	0	0	1	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0010	1246	1	0	0	0	0	1	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0011	1246	1	0	0	0	1	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0012	1246	1	1	0	0	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0013	1246	1	1	0	0	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0014	1247	1	1	0	0	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0015	1247	1	1	0	0	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0016	1246	1	0	0	0	0	1	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	t0017	1246	1	1	0	0	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75D_chrX_135280791_135349109	1/0	t0001	4079	101	28	17	47	1	7	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0002	4079	70	5	10	42	5	8	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/1	t0003	4079	31	3	10	10	0	7	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0004	4079	22	8	5	9	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0005	4079	10	9	1	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0006	4079	6	6	0	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0007	4079	6	0	0	6	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0008	4079	3	0	2	0	1	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0009	4079	2	0	0	2	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0010	4079	2	0	0	2	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0011	4079	2	0	0	2	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0012	4079	1	0	1	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0013	4079	1	1	0	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0014	4079	1	1	0	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0015	4080	1	0	0	1	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0016	4079	1	0	0	1	0	0	copy fasta	ZNF75D	chrX	135280791	135349109