Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF75D_chrX_135280791_135349109	0/0	t0017	4079	1	1	0	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0018	4079	1	1	0	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0019	4079	1	0	1	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0020	4079	1	0	0	1	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0021	4079	1	0	0	0	0	1	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0022	4079	1	1	0	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0023	4079	1	0	1	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0024	4079	1	0	1	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0025	4079	1	1	0	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0026	4080	1	0	0	0	0	1	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0027	4079	1	1	0	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	t0028	4079	1	0	0	1	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF761_chr19_53426984_53463261	1/0	t0001	1743	108	27	13	61	2	4	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/1	t0002	1743	107	6	33	39	9	19	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0003	1743	105	11	15	62	4	13	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0004	1711	31	1	1	26	0	3	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0005	1743	28	28	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0006	1743	19	3	6	8	1	1	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0007	1743	19	1	9	5	2	2	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0008	1743	14	4	0	9	0	1	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0009	1743	6	5	1	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0010	1716	3	2	0	0	0	1	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0011	1743	3	3	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0012	1743	2	0	0	2	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0013	1743	2	2	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0014	1743	2	0	2	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0015	1743	1	1	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0016	1743	1	0	0	1	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0017	1716	1	1	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0018	1716	1	1	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0019	1743	1	0	0	1	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0020	1743	1	0	0	1	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0021	1711	1	1	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0022	1743	1	0	0	1	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0023	1738	1	1	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0024	1722	1	0	0	1	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	t0025	1743	1	0	0	1	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF763_chr19_11960040_11985617	0/0	t0001	1679	196	31	48	81	12	24	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/1	t0002	1679	83	0	13	58	3	8	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0003	1680	37	28	1	6	0	2	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0004	1680	11	11	0	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0005	1680	11	11	0	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0006	1678	6	1	3	1	1	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0007	1679	6	6	0	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0008	1679	5	0	0	5	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0009	1679	4	0	0	2	0	2	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0010	1678	3	1	1	1	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0011	1680	3	0	2	0	0	1	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0012	1679	3	3	0	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0013	1680	2	0	0	0	0	2	copy fasta	ZNF763	chr19	11960040	11985617