Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF763_chr19_11960040_11985617	1/0	t0014	1678	2	0	0	1	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0015	1679	1	0	1	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0016	1679	1	0	0	0	0	1	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0017	1680	1	0	1	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0018	1680	1	1	0	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0019	1680	1	1	0	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0020	1679	1	1	0	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0021	1679	1	1	0	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0022	1679	1	0	0	1	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0023	1679	1	0	0	1	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0024	1679	1	0	0	1	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0025	1680	1	0	0	1	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	t0026	1679	1	0	0	1	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF764_chr16_30548764_30563374	1/1	t0001	1623	300	80	58	109	18	33	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	t0002	1625	15	2	3	10	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	t0003	1623	6	2	4	0	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	t0004	1623	6	6	0	0	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	t0005	1623	4	0	0	4	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	t0006	1623	4	0	0	4	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	t0007	1623	4	0	0	0	0	4	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	t0008	1623	3	0	0	3	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	t0009	1623	1	0	0	1	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	t0010	1623	1	1	0	0	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	t0011	1623	1	0	0	1	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	t0012	1623	1	0	0	0	0	1	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	t0013	1623	1	0	1	0	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	t0014	1625	1	1	0	0	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF765_chr19_53390149_53417009	0/1	t0001	3003	62	3	27	16	5	10	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	1/0	t0002	3001	51	8	2	38	1	1	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0003	3005	46	9	17	12	3	5	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0004	3006	43	1	3	38	0	1	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0005	3002	39	4	6	19	3	7	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0006	3005	28	12	5	7	2	2	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0007	3005	25	5	3	13	0	4	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0008	3003	19	0	0	19	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0009	3002	19	6	1	8	0	4	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0010	3003	16	6	2	8	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0011	3001	16	10	1	5	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0012	3003	9	0	3	2	2	2	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0013	3001	6	0	0	6	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0014	3003	5	2	2	1	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0015	3004	5	5	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0016	3004	4	0	1	0	0	3	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0017	3003	3	0	0	3	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0018	3006	3	0	2	0	0	1	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0019	3005	3	1	0	1	0	1	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0020	3004	2	0	0	2	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0021	3005	2	2	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0022	3006	2	0	0	2	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0023	3005	2	2	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009