Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF765_chr19_53390149_53417009	0/0	t0024	3001	2	0	0	2	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0025	3003	2	0	0	1	0	1	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0026	3006	2	0	0	2	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0027	3003	2	0	2	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0028	3002	2	0	0	2	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0029	3003	1	0	0	0	0	1	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0030	3003	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0031	3003	1	0	1	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0032	3003	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0033	3006	1	0	0	1	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0034	3004	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0035	3004	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0036	3004	1	0	0	1	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0037	3005	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0038	3006	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0039	3003	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0040	3001	1	0	0	1	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0041	3002	1	0	0	0	0	1	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0042	3001	1	0	0	1	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0043	3002	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0044	3002	1	0	1	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0045	3004	1	0	1	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0046	3005	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0047	3004	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0048	3003	1	0	0	1	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0049	3003	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0050	3005	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0051	3005	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0052	3005	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0053	3004	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0054	3001	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0055	3001	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	t0056	3001	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF766_chr19_52264587_52301046	0/0	t0001	4876	85	13	23	30	9	10	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0002	4868	46	3	7	27	3	6	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0003	4876	42	9	9	23	0	1	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0004	4868	25	0	2	15	1	7	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0005	4878	22	18	4	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0006	4875	17	2	3	8	0	4	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0007	4872	12	5	5	0	0	2	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0008	4876	12	0	4	8	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0009	4868	10	0	0	9	0	1	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0010	4869	9	0	0	9	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0011	4875	9	7	2	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0012	4877	7	5	2	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0013	4875	6	0	0	6	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0014	4868	5	5	0	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0015	4875	5	0	2	2	1	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0016	4875	5	0	5	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0017	4876	4	0	0	4	0	0	copy fasta	ZNF766	chr19	52264587	52301046