Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF766_chr19_52264587_52301046	0/0	t0068	4867	1	0	0	1	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0069	4874	1	0	1	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0070	4875	1	0	0	1	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0071	4875	1	0	1	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0072	4876	1	0	0	1	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0073	4862	1	0	0	0	0	1	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0074	4876	1	0	0	0	0	1	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0075	4838	1	1	0	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0076	4876	1	1	0	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0077	4877	1	1	0	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0078	4877	1	1	0	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0079	4878	1	1	0	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0080	4878	1	1	0	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0081	4878	1	1	0	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0082	4879	1	0	1	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	t0083	4876	1	0	0	0	0	1	copy fasta	ZNF766	chr19	52264587	52301046
ZNF768_chr16_30519004_30531566	1/1	t0001	667	340	91	75	116	18	38	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	t0002	667	1	1	0	0	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	t0003	667	1	0	1	0	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	t0004	667	1	0	0	1	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	t0005	667	1	0	0	1	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF76_chr6_35254735_35300985	0/0	t0001	941	152	29	35	72	4	12	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	1/1	t0002	941	114	25	17	62	2	6	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	t0003	941	26	23	1	2	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	t0004	941	5	2	1	0	0	2	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	t0005	941	5	0	0	5	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	t0006	940	4	4	0	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	t0007	941	1	0	1	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	t0008	941	1	0	1	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	t0009	941	1	0	0	1	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	t0010	941	1	1	0	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF770_chr15_34973341_34993287	0/0	t0001	3364	117	8	26	63	6	14	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/1	t0002	3361	57	6	10	34	1	5	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0003	3361	34	0	8	25	0	1	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0004	3363	30	1	4	21	0	4	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0005	3361	24	23	1	0	0	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0006	3362	23	11	2	8	2	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0007	3363	21	0	4	11	3	3	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0008	3362	20	3	6	3	1	7	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0009	3363	10	8	2	0	0	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0010	3361	6	6	0	0	0	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0011	3361	5	5	0	0	0	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0012	3362	5	5	0	0	0	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0013	3361	4	1	0	1	2	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0014	3362	4	4	0	0	0	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	1/0	t0015	3364	3	0	1	0	0	1	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0016	3364	3	0	0	3	0	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0017	3361	2	2	0	0	0	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0018	3363	2	2	0	0	0	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	t0019	3353	1	0	0	0	0	1	copy fasta	ZNF770	chr15	34973341	34993287