Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF772_chr19_57464586_57482566	0/0	t0018	3941	2	2	0	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0019	3940	2	2	0	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0020	3940	2	0	0	0	2	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0021	3940	2	0	0	0	0	2	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0022	3940	1	0	0	0	0	1	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0023	3946	1	0	0	1	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0024	3941	1	1	0	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0025	3941	1	0	1	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0026	3941	1	1	0	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0027	3942	1	0	0	1	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0028	3946	1	1	0	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0029	3941	1	1	0	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0030	3940	1	0	0	1	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0031	3940	1	1	0	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0032	3940	1	0	1	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	t0033	3941	1	1	0	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF773_chr19_57494938_57513229	0/1	t0001	936	100	13	22	52	0	12	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0002	950	69	13	20	22	7	7	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	1/0	t0003	949	62	19	5	28	2	7	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0004	943	54	22	8	21	2	1	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0005	936	34	14	1	13	1	5	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0006	936	25	0	0	17	4	4	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0007	944	12	8	0	4	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0008	944	8	3	2	2	0	1	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0009	949	5	0	0	2	0	3	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0010	951	5	2	1	2	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0011	935	5	0	0	5	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0012	949	3	0	1	0	0	2	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0013	937	3	0	2	1	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0014	937	3	0	0	3	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0015	949	2	1	1	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0016	950	2	0	0	2	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0017	949	2	0	2	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0018	936	2	0	0	2	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0019	1120	1	1	0	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0020	950	1	0	0	1	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0021	952	1	0	1	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0022	951	1	1	0	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0023	950	1	0	1	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0024	951	1	0	0	1	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0025	950	1	0	0	1	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0026	948	1	0	0	1	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0027	945	1	0	0	1	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0028	948	1	1	0	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0029	936	1	1	0	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0030	918	1	0	0	1	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0031	949	1	1	0	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0032	937	1	0	0	0	0	1	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0033	951	1	0	0	1	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	t0034	936	1	0	0	1	0	0	copy fasta	ZNF773	chr19	57494938	57513229