JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C3orf70_chr3_185071838_185158060	0/0	t0106	6442	1	0	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0107	6451	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0108	6407	1	0	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0109	6409	1	0	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0110	6410	1	0	0	0	1	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0111	6413	1	0	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0112	6413	1	0	0	0	0	1	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0113	6408	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0114	6411	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0115	6406	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0116	6408	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0117	6410	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0118	6408	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0119	6411	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0120	6418	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0121	6421	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0122	6408	1	0	0	0	0	1	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0123	6424	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0124	6422	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0125	6423	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0126	6424	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0127	6421	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0128	6422	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0129	6421	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0130	6411	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0131	6412	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0132	6414	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0133	6415	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0134	6415	1	0	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0135	6406	1	0	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0136	6406	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0137	6425	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0138	6427	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0139	6425	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0140	6445	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0141	6421	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0142	6412	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0143	6410	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0144	6408	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0145	6409	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0146	6413	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0147	6409	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0148	6409	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf80_chr3_160220422_160233213	1/1	t0001	2049	336	70	71	142	15	36	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	t0002	2049	22	21	1	0	0	0	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	t0003	2049	21	0	0	20	0	1	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	t0004	2049	14	2	1	7	1	3	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	t0005	2050	6	1	3	0	0	2	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	t0006	2049	3	3	0	0	0	0	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	t0007	2049	1	0	0	1	0	0	copy fasta	C3orf80	chr3	160220422	160233213