Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF778_chr16_89212703_89242141	0/0	t0003	8889	29	0	4	24	0	1	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/1	t0004	8825	29	1	0	26	0	1	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0005	8820	19	16	1	1	0	1	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0006	8803	16	0	0	16	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0007	8820	16	0	2	11	0	3	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0008	8802	9	1	6	0	1	1	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0009	8803	8	0	0	8	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0010	8825	7	0	0	3	0	4	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0011	8802	6	0	6	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0012	8797	5	0	3	1	0	1	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0013	8825	4	3	1	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0014	8825	4	4	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0015	8825	4	4	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0016	8825	4	0	0	4	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0017	8855	4	4	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0018	8857	4	4	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0019	8825	3	0	0	3	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	1/0	t0020	8919	3	2	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0021	8802	3	0	1	2	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0022	8855	3	0	0	1	0	2	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0023	8804	3	3	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0024	8758	3	3	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0025	8825	3	0	0	3	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0026	8825	2	0	2	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0027	8825	2	0	0	0	0	2	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0028	8825	2	2	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0029	8825	2	0	0	2	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0030	8825	2	2	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0031	8825	2	0	0	0	2	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0032	8825	2	0	0	2	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0033	8825	2	0	1	0	0	1	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0034	8802	2	0	0	0	1	1	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0035	8803	2	0	0	0	0	2	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0036	8825	2	0	0	2	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0037	8825	2	0	0	2	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0038	8804	2	2	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0039	8855	2	0	0	1	0	1	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0040	8857	2	2	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0041	8758	2	2	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0042	8820	2	0	2	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0043	8802	2	0	0	0	2	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0044	8802	2	0	0	0	0	2	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0045	8802	1	0	0	0	1	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0046	8802	1	0	1	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0047	8894	1	1	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0048	8855	1	0	1	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0049	8780	1	0	0	1	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0050	8825	1	0	1	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0051	8825	1	0	0	0	1	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0052	8802	1	0	0	1	0	0	copy fasta	ZNF778	chr16	89212703	89242141