Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF778_chr16_89212703_89242141	0/0	t0153	8804	1	1	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF77_chr19_2928218_2949971	0/1	t0001	403	280	33	69	123	16	38	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	1/0	t0002	403	123	24	7	81	1	9	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	t0003	403	27	27	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	t0004	403	7	2	1	0	1	3	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	t0005	403	5	5	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	t0006	403	2	2	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	t0007	403	2	2	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	t0008	403	1	1	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	t0009	403	1	0	1	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF780A_chr19_40068045_40095943	1/1	t0001	1625	161	11	34	88	6	20	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0002	1625	45	10	4	27	0	4	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0003	1625	32	29	0	1	1	1	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0004	1625	17	9	3	4	0	1	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0005	1625	14	4	0	10	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0006	1625	12	10	2	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0007	1625	8	0	0	8	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0008	1625	5	4	1	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0009	1625	5	5	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0010	1625	3	3	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0011	1625	2	2	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0012	1625	2	0	0	0	2	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0013	1625	2	0	1	0	1	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0014	1625	1	1	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0015	1625	1	1	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0016	1625	1	0	1	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0017	1625	1	1	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0018	1625	1	1	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0019	1625	1	1	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0020	1625	1	0	0	1	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	t0021	1625	1	0	0	1	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780B_chr19_40023260_40061231	0/1	t0001	6186	121	16	29	62	3	10	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0002	6186	39	8	4	23	0	4	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	1/0	t0003	6186	32	12	4	14	0	1	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0004	6185	21	21	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0005	6186	6	0	2	4	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0006	6186	5	1	0	4	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0007	6186	5	0	0	5	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0008	6186	4	4	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0009	6186	4	0	0	4	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0010	6186	4	4	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0011	6185	3	3	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0012	6186	3	0	0	0	0	3	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0013	6186	3	0	0	1	1	1	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0014	6187	3	0	0	3	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0015	6187	3	3	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0016	6186	2	2	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0017	6186	2	2	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0018	6186	2	2	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0019	6187	2	2	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231