Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF780B_chr19_40023260_40061231	0/0	t0020	6186	2	0	0	2	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0021	6186	2	0	0	2	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0022	6186	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0023	6186	1	0	1	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0024	6186	1	0	0	1	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0025	6185	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0026	6186	1	0	1	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0027	6186	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0028	6186	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0029	6186	1	0	0	1	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0030	6186	1	0	0	1	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0031	6186	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0032	6186	1	0	0	1	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0033	6186	1	0	1	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0034	6186	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0035	6186	1	0	0	0	0	1	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0036	6186	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0037	6186	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0038	6186	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0039	6186	1	0	0	0	0	1	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0040	6187	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0041	6187	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0042	6186	1	0	0	0	0	1	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	t0043	6186	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF782_chr9_96811269_96859514	1/0	t0001	2343	130	25	26	57	6	15	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0002	2343	48	0	0	47	0	1	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/1	t0003	2344	33	2	12	3	6	9	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0004	2343	28	21	3	0	0	4	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0005	2343	21	0	0	19	0	2	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0006	2343	9	9	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0007	2343	7	4	3	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0008	2342	7	5	2	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0009	2343	6	6	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0010	2343	4	4	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0011	2343	4	4	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0012	2343	2	1	1	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0013	2343	2	0	0	2	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0014	2343	2	2	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0015	2343	2	2	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0016	2343	1	1	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0017	2343	1	1	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0018	2343	1	0	0	1	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0019	2343	1	1	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0020	2343	1	0	0	1	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0021	2343	1	0	0	0	0	1	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	t0022	2343	1	0	1	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF783_chr7_149257196_149289988	1/0	t0001	2784	164	36	24	78	7	18	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0002	2791	74	0	17	50	1	6	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0003	2790	25	1	9	2	3	10	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0004	2790	24	5	5	14	0	0	copy fasta	ZNF783	chr7	149257196	149289988