JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C3orf80_chr3_160220422_160233213	0/0	t0008	2049	1	1	0	0	0	0	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	t0009	2049	1	0	0	0	0	1	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	t0010	2049	1	1	0	0	0	0	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	t0011	2049	1	0	0	1	0	0	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	t0012	2049	1	0	0	1	0	0	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	t0013	2049	1	0	0	0	0	1	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	t0014	2049	1	1	0	0	0	0	copy fasta	C3orf80	chr3	160220422	160233213
C3orf84_chr3_49172634_49196858	1/1	t0001	90	305	86	64	93	14	46	copy fasta	C3orf84	chr3	49172634	49196858
C3orf84_chr3_49172634_49196858	0/0	t0002	90	1	0	0	1	0	0	copy fasta	C3orf84	chr3	49172634	49196858
C3orf85_chr3_109131719_109156401	0/0	t0001	1535	182	17	39	106	5	15	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	t0002	1535	119	52	32	12	4	19	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	1/1	t0003	1535	38	4	8	13	5	6	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	t0004	1536	8	8	0	0	0	0	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	t0005	1535	8	7	1	0	0	0	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	t0006	1535	5	5	0	0	0	0	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	t0007	1535	5	4	1	0	0	0	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	t0008	1535	2	2	0	0	0	0	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	t0009	1535	1	1	0	0	0	0	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	t0010	1534	1	0	1	0	0	0	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	t0011	1535	1	0	0	1	0	0	copy fasta	C3orf85	chr3	109131719	109156401
C4A_chr6_31977057_32007681	0/0	t0001	193	312	71	56	149	11	25	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	t0002	193	9	0	0	1	1	7	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	t0003	193	1	1	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4BPA_chr1_207099233_207149972	1/1	t0001	479	338	91	75	112	16	42	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	t0002	479	2	1	1	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	t0003	479	1	1	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	t0004	479	1	1	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPB_chr1_207083860_207104993	1/1	t0001	202	386	96	80	146	18	44	copy fasta	C4BPB	chr1	207083860	207104993
C4BPB_chr1_207083860_207104993	0/0	t0002	202	2	2	0	0	0	0	copy fasta	C4BPB	chr1	207083860	207104993
C4B_chr6_32009795_32040418	0/0	t0001	193	331	69	64	148	16	34	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	t0002	193	3	3	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4orf17_chr4_99506021_99547303	1/1	t0001	540	386	96	72	172	6	38	copy fasta	C4orf17	chr4	99506021	99547303
C4orf19_chr4_37448925_37598510	0/0	t0001	2700	104	30	19	49	0	6	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0002	2699	38	0	9	26	0	3	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0003	2699	33	4	15	0	6	8	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/1	t0004	2697	30	1	12	13	2	1	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	1/0	t0005	2699	26	11	7	5	0	2	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0006	2700	14	0	6	7	0	1	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0007	2699	7	0	0	6	0	1	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0008	2697	7	1	0	0	2	4	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0009	2697	7	6	1	0	0	0	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0010	2699	6	0	1	2	0	3	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0011	2697	5	4	1	0	0	0	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0012	2701	5	0	0	4	0	1	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0013	2698	4	3	0	0	1	0	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0014	2699	4	0	3	0	1	0	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0015	2699	4	0	0	0	0	4	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0016	2708	3	0	0	3	0	0	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0017	2700	3	1	0	1	0	1	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	t0018	2699	3	1	2	0	0	0	copy fasta	C4orf19	chr4	37448925	37598510