Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF787_chr19_56082366_56126295	0/0	t0056	790	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0057	790	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0058	791	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0059	791	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0060	791	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0061	791	1	0	1	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0062	791	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0063	778	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0064	778	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0065	791	1	0	1	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0066	792	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0067	792	1	0	0	0	0	1	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0068	792	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0069	792	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0070	792	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0071	792	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0072	792	1	0	1	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0073	792	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0074	779	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0075	792	1	0	1	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0076	792	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0077	793	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0078	793	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0079	793	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0080	793	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0081	793	1	0	0	0	0	1	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0082	793	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0083	794	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0084	794	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0085	790	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0086	793	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0087	793	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF789_chr7_99467890_99492605	1/1	t0001	339	326	91	48	132	14	39	copy fasta	ZNF789	chr7	99467890	99492605
ZNF789_chr7_99467890_99492605	0/0	t0002	339	5	5	0	0	0	0	copy fasta	ZNF789	chr7	99467890	99492605
ZNF789_chr7_99467890_99492605	0/0	t0003	339	2	2	0	0	0	0	copy fasta	ZNF789	chr7	99467890	99492605
ZNF789_chr7_99467890_99492605	0/0	t0004	339	1	0	0	0	0	1	copy fasta	ZNF789	chr7	99467890	99492605
ZNF790_chr19_36812428_36843387	0/1	t0001	1127	195	56	44	59	13	22	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	t0002	1126	90	16	15	42	3	14	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	1/0	t0003	1130	43	0	3	37	0	2	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	t0004	1130	10	10	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	t0005	1127	6	5	1	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	t0006	1127	5	2	3	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	t0007	1127	4	0	4	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	t0008	1126	1	0	0	1	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	t0009	1127	1	1	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	t0010	1127	1	0	0	1	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	t0011	1127	1	1	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	t0012	1126	1	0	0	1	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	t0013	1130	1	1	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	t0014	1130	1	0	0	1	0	0	copy fasta	ZNF790	chr19	36812428	36843387