Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF791_chr19_12605920_12638834	1/0	t0001	4735	65	7	3	46	2	6	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0002	4735	50	12	14	15	1	8	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/1	t0003	4735	40	5	14	10	5	5	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0004	4740	33	2	13	12	5	1	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0005	4735	19	0	5	14	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0006	4735	11	10	1	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0007	4735	9	0	0	9	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0008	4735	9	0	0	9	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0009	4737	8	8	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0010	4738	7	0	0	0	0	7	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0011	4734	7	0	0	5	0	2	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0012	4737	5	5	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0013	4735	5	1	4	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0014	4736	4	0	1	3	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0015	4737	4	3	1	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0016	4741	3	0	2	0	0	1	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0017	4740	3	0	0	3	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0018	4741	3	3	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0019	4737	3	3	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0020	4736	3	0	1	2	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0021	4735	3	0	3	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0022	4736	3	0	0	1	0	2	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0023	4735	3	0	0	3	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0024	4736	2	0	0	2	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0025	4737	2	0	0	1	0	1	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0026	4737	2	2	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0027	4737	2	1	1	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0028	4736	2	0	0	2	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0029	4738	2	2	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0030	4737	2	2	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0031	4736	2	0	1	0	0	1	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0032	4734	2	2	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0033	4734	2	0	0	0	0	2	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0034	4734	2	1	1	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0035	4740	2	0	1	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0036	4735	2	0	0	2	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0037	4734	2	0	0	1	0	1	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0038	4737	2	2	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0039	4736	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0040	4734	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0041	4737	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0042	4736	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0043	4734	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0044	4735	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0045	4734	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0046	4735	1	0	0	0	0	1	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0047	4735	1	0	0	0	0	1	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0048	4735	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0049	4739	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0050	4740	1	0	1	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834