Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF791_chr19_12605920_12638834	0/0	t0051	4741	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0052	4740	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0053	4740	1	0	0	0	1	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0054	4742	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0055	4738	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0056	4739	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0057	4736	1	0	0	0	0	1	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0058	4736	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0059	4736	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0060	4737	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0061	4737	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0062	4735	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0063	4737	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0064	4736	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0065	4734	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0066	4735	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0067	4736	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0068	4735	1	0	0	0	0	1	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0069	4736	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0070	4735	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0071	4735	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0072	4734	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0073	4736	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0074	4734	1	0	1	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0075	4735	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0076	4741	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0077	4737	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0078	4736	1	0	0	0	0	1	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0079	4736	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0080	4734	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0081	4735	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0082	4735	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0083	4733	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0084	4734	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0085	4736	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0086	4735	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0087	4727	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0088	4738	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0089	4735	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	t0090	4734	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF792_chr19_34951354_34969229	1/1	t0001	2170	138	12	34	68	9	13	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0002	2170	107	42	16	35	3	11	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0003	2170	100	4	12	74	3	7	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0004	2170	12	0	4	6	1	1	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0005	2170	10	0	0	4	0	6	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0006	2170	9	0	5	3	0	1	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0007	2170	7	7	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0008	2170	7	4	1	2	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0009	2170	7	1	0	4	0	2	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0010	2170	6	6	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229