Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF7_chr8_144822560_144848772	0/0	t0079	700	1	0	0	0	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0080	698	1	0	1	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0081	700	1	1	0	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0082	700	1	1	0	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0083	699	1	0	1	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0084	700	1	0	0	0	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0085	700	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0086	699	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0087	698	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0088	699	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0089	699	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0090	699	1	0	0	0	1	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0091	700	1	0	0	0	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0092	699	1	0	1	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0093	697	1	0	0	0	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0094	699	1	1	0	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0095	698	1	1	0	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0096	698	1	0	1	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0097	699	1	0	0	0	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0098	699	1	0	0	0	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0099	697	1	1	0	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0100	698	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0101	698	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0102	697	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0103	698	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0104	699	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0105	699	1	0	0	0	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0106	698	1	0	0	0	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0107	699	1	1	0	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	1/0	t0108	700	1	0	0	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0109	697	1	0	1	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0110	699	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0111	698	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0112	700	1	0	1	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF800_chr7_127365043_127397708	0/1	t0001	2479	166	37	24	75	7	22	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0002	2479	60	11	18	21	1	9	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	1/0	t0003	2479	60	22	14	15	3	5	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0004	2479	29	0	7	17	3	2	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0005	2479	8	7	1	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0006	2479	7	6	1	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0007	2475	4	0	2	2	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0008	2479	3	3	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0009	2479	3	0	0	3	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0010	2479	2	2	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0011	2475	2	2	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0012	2479	2	0	2	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0013	2479	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0014	2479	1	0	1	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0015	2479	1	0	0	0	0	1	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0016	2475	1	0	1	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708