Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF808_chr19_52522668_52561336	0/0	t0003	874	14	7	6	0	1	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	t0004	866	9	9	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	t0005	874	5	0	0	5	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	t0006	874	4	0	0	4	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	t0007	874	4	4	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	t0008	874	3	0	0	3	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	t0009	874	3	3	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	t0010	874	1	0	0	0	1	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	t0011	874	1	1	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	t0012	874	1	0	1	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	t0013	874	1	0	0	1	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	t0014	874	1	1	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	t0015	874	1	0	0	0	0	1	copy fasta	ZNF808	chr19	52522668	52561336
ZNF80_chr3_114229631_114242578	1/0	t0001	2127	132	13	26	72	7	13	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0002	2126	114	10	21	68	4	11	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0003	2126	73	17	12	32	2	10	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0004	2126	22	13	3	3	0	3	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0005	2126	11	9	2	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0006	2128	10	0	4	1	2	3	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0007	2127	10	2	5	0	1	2	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0008	2126	9	8	1	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0009	2127	8	0	0	8	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0010	2125	5	5	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0011	2126	3	3	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0012	2127	3	3	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0013	2127	3	1	2	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0014	2126	2	0	0	0	1	1	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0015	2126	2	0	2	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/1	t0016	2126	2	0	1	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0017	2126	2	2	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0018	2127	2	0	2	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0019	2126	1	1	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0020	2126	1	1	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0021	2126	1	0	0	0	0	1	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0022	2126	1	1	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0023	2126	1	0	0	1	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0024	2127	1	1	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0025	2112	1	1	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0026	2126	1	1	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0027	2127	1	0	1	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0028	2127	1	0	0	1	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0029	2127	1	0	0	1	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0030	2127	1	0	0	1	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	t0031	2127	1	0	0	0	1	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF813_chr19_53462733_53501255	0/1	t0001	4301	76	5	14	48	3	5	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	t0002	4299	69	2	19	36	3	9	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	t0003	4293	43	7	8	18	0	10	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	t0004	4296	39	6	4	28	0	1	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	t0005	4298	35	9	6	7	2	11	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	t0006	4290	21	1	4	10	2	4	copy fasta	ZNF813	chr19	53462733	53501255