Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF813_chr19_53462733_53501255	0/0	t0057	4296	1	0	0	1	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	t0058	4296	1	0	0	1	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	t0059	4296	1	1	0	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	t0060	4300	1	0	1	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	t0061	4296	1	0	1	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	t0062	4182	1	1	0	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF814_chr19_57864381_57894037	0/1	t0001	3675	141	15	20	92	5	8	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0002	3678	80	7	12	51	2	8	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0003	3678	77	0	27	30	3	17	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0004	3679	13	0	2	10	0	1	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0005	3687	10	10	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0006	3676	9	0	8	1	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0007	3686	7	0	4	0	2	1	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0008	3674	6	6	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0009	3676	5	5	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0010	3677	4	0	1	1	0	2	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0011	3674	4	1	0	2	0	1	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0012	3679	4	3	1	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0013	3676	4	4	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0014	3674	4	4	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0015	3688	3	3	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0016	3674	3	3	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0017	3674	3	2	1	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	1/0	t0018	3677	3	0	0	2	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0019	3675	3	3	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0020	3678	2	0	0	2	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0021	3679	2	0	0	1	0	1	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0022	3679	2	2	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0023	3675	2	0	0	0	1	1	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0024	3675	2	0	0	2	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0025	3679	2	0	0	2	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0026	3692	2	2	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0027	3678	2	2	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0028	3675	1	0	0	0	0	1	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0029	3674	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0030	3685	1	0	1	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0031	3680	1	0	0	0	1	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0032	3678	1	0	0	1	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0033	3692	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0034	3691	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0035	3692	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0036	3694	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0037	3697	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0038	3680	1	0	0	1	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0039	3693	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0040	3694	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0041	3690	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0042	3691	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0043	3674	1	0	1	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0044	3675	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037