Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF829_chr19_36883124_36921291	0/0	t0010	3734	5	0	3	0	0	2	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0011	3731	4	2	2	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0012	3735	4	0	0	3	0	1	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0013	3732	3	1	2	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0014	3730	3	3	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0015	3727	2	0	1	1	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0016	3734	2	2	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0017	3728	2	0	0	2	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0018	3729	2	1	0	0	0	1	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0019	3734	1	0	0	1	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0020	3734	1	1	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0021	3734	1	0	1	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0022	3735	1	0	0	1	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0023	3733	1	0	1	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0024	3728	1	0	1	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0025	3738	1	1	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0026	3734	1	1	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0027	3729	1	1	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0028	3735	1	0	1	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0029	3733	1	0	0	0	0	1	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0030	3734	1	1	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0031	3732	1	1	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF830_chr17_34956540_34968777	0/0	t0001	1120	251	25	28	171	7	20	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	1/1	t0002	1120	177	57	38	49	9	22	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	t0003	1120	10	7	3	0	0	0	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	t0004	1120	6	4	2	0	0	0	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	t0005	1120	3	0	1	0	2	0	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	t0006	1120	2	2	0	0	0	0	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	t0007	1120	1	1	0	0	0	0	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	t0008	1120	1	0	0	0	0	1	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	t0009	1120	1	0	0	0	0	1	copy fasta	ZNF830	chr17	34956540	34968777
ZNF831_chr20_59158821_59264113	0/1	t0001	4795	96	5	17	50	5	18	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0002	4796	44	4	9	26	3	2	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	1/0	t0003	4794	32	1	19	6	5	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0004	4793	20	18	2	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0005	4793	13	12	0	0	0	1	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0006	4786	10	8	2	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0007	4794	8	5	3	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0008	4796	8	0	2	0	2	4	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0009	4794	6	6	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0010	4794	5	0	0	0	0	5	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0011	4796	5	2	1	1	0	1	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0012	4795	5	0	0	5	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0013	4794	4	3	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0014	4793	4	0	0	3	0	1	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0015	4796	3	3	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0016	4788	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0017	4793	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0018	4794	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0019	4794	2	0	1	0	1	0	copy fasta	ZNF831	chr20	59158821	59264113