Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF831_chr20_59158821_59264113	0/0	t0020	4793	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0021	4793	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0022	4793	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0023	4772	2	0	0	2	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0024	4796	2	0	0	2	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0025	4795	2	0	0	2	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0026	4795	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0027	4793	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0028	4793	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0029	4794	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0030	4794	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0031	4794	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0032	4793	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0033	4794	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0034	4793	1	0	0	1	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0035	4793	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0036	4793	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0037	4791	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0038	4791	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0039	4794	1	0	0	0	0	1	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0040	4795	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0041	4796	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0042	4795	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0043	4795	1	0	0	0	0	1	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0044	4795	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0045	4796	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0046	4795	1	0	0	0	0	1	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0047	4795	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0048	4795	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0049	4795	1	0	0	1	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0050	4796	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0051	4795	1	0	0	1	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0052	4795	1	0	0	0	0	1	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	t0053	4795	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF835_chr19_56656980_56676757	0/0	t0001	1836	103	1	15	79	0	8	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	1/0	t0002	1835	70	7	26	20	3	13	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0003	1835	69	20	4	40	0	5	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0004	1835	51	8	8	24	4	7	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/1	t0005	1837	22	9	8	0	4	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0006	1836	18	3	2	12	0	1	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0007	1838	14	12	2	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0008	1835	12	2	7	0	3	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0009	1836	9	9	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0010	1837	9	0	1	3	2	3	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0011	1836	5	0	0	4	0	1	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0012	1836	5	0	1	3	0	1	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0013	1835	4	4	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0014	1836	4	1	0	2	1	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0015	1836	4	1	1	0	1	1	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0016	1834	4	2	1	1	0	0	copy fasta	ZNF835	chr19	56656980	56676757