Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF835_chr19_56656980_56676757	0/0	t0017	1836	4	0	0	3	0	1	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0018	1836	4	4	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0019	1836	3	1	1	1	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0020	1835	3	0	0	3	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0021	1835	3	3	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0022	1838	3	2	1	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0023	1834	2	0	0	2	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0024	1835	2	0	2	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0025	1835	2	0	0	2	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0026	1837	2	0	1	1	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0027	1835	1	0	0	1	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0028	1835	1	0	1	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0029	1835	1	0	0	0	0	1	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0030	1834	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0031	1835	1	0	1	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0032	1838	1	0	1	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0033	1835	1	0	1	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0034	1835	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0035	1835	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0036	1835	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0037	1838	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0038	1834	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0039	1835	1	0	0	1	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0040	1837	1	0	1	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0041	1837	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0042	1835	1	0	0	1	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0043	1836	1	0	0	1	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0044	1838	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	t0045	1836	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF836_chr19_52149107_52176621	0/0	t0001	1266	440	84	85	207	17	47	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	t0002	1266	8	1	0	6	0	1	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	t0003	1266	5	5	0	0	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	t0004	1266	4	4	0	0	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	t0005	1266	3	0	3	0	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	t0006	1266	2	2	0	0	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	t0007	1266	1	1	0	0	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	t0008	1266	1	1	0	0	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	t0009	1266	1	0	0	1	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	t0010	1266	1	1	0	0	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	t0011	1266	1	0	0	0	1	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	t0012	1266	1	1	0	0	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF837_chr19_58362623_58386030	0/1	t0001	345	403	81	82	180	17	42	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	t0002	345	4	4	0	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	t0003	345	2	2	0	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	1/0	t0004	344	1	0	0	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	t0005	345	1	0	0	0	1	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	t0006	345	1	1	0	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF839_chr14_102314746_102347367	1/1	t0001	209	205	62	40	73	5	23	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	t0002	209	112	8	19	68	5	12	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	t0003	204	93	24	21	29	8	11	copy fasta	ZNF839	chr14	102314746	102347367