JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C4orf33_chr4_129091152_129121637	0/0	t0014	4905	3	0	0	3	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0015	4903	3	3	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0016	4906	3	0	0	3	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0017	4903	3	3	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0018	4906	3	0	0	3	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0019	4904	3	3	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0020	4903	3	3	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0021	4931	2	0	2	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0022	4912	2	2	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0023	4916	2	2	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0024	4903	2	2	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0025	4910	2	0	2	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0026	4906	2	0	0	0	0	2	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0027	4940	2	0	0	0	0	2	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0028	4906	1	0	1	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0029	4914	1	1	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0030	4912	1	1	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0031	4914	1	1	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0032	4916	1	1	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0033	4908	1	1	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0034	4912	1	1	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0035	4936	1	0	0	1	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0036	4903	1	1	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0037	4930	1	1	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0038	4927	1	1	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0039	4903	1	1	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0040	4906	1	0	0	1	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0041	4914	1	1	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0042	4916	1	0	0	1	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0043	4910	1	0	0	1	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0044	4903	1	1	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0045	4903	1	0	0	0	1	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0046	4937	1	1	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0047	4906	1	1	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0048	4906	1	0	1	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0049	4906	1	0	1	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0050	4910	1	0	0	1	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0051	4910	1	0	1	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0052	4910	1	0	0	1	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0053	4910	1	0	0	1	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0054	4944	1	0	0	0	1	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0055	4906	1	0	0	0	0	1	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0056	4906	1	0	1	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0057	4910	1	0	1	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	t0058	4901	1	0	1	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf36_chr4_86871205_86897422	1/1	t0001	555	318	67	47	160	12	30	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	t0002	556	18	2	4	10	0	2	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	t0003	555	14	14	0	0	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	t0004	555	10	9	1	0	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	t0005	555	9	1	6	0	1	1	copy fasta	C4orf36	chr4	86871205	86897422