Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF844_chr19_12059731_12086565	0/0	t0069	4591	1	0	0	0	1	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF845_chr19_53328749_53361906	0/0	t0001	3436	85	15	9	55	3	3	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/1	t0002	3436	56	1	27	10	3	14	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0003	3436	55	0	9	44	2	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0004	3435	37	1	11	15	3	7	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0005	3436	27	1	0	21	0	5	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0006	3436	24	3	11	7	2	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0007	3436	19	0	1	18	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0008	3436	13	10	0	1	0	2	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0009	3436	12	7	0	2	0	3	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0010	3436	11	10	1	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0011	3436	10	2	0	8	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0012	3436	10	1	4	0	2	3	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0013	3436	10	9	1	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0014	3436	6	4	1	0	0	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0015	3436	6	0	0	6	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0016	3436	6	1	0	3	0	2	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0017	3436	5	5	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0018	3435	5	0	0	5	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0019	3435	4	0	1	0	0	3	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0020	3436	4	2	2	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0021	3436	4	4	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0022	3436	3	0	0	3	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0023	3436	3	0	0	3	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0024	3436	2	0	0	2	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0025	3436	2	0	1	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0026	3436	2	0	2	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0027	3436	2	1	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0028	3436	2	0	0	1	1	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0029	3436	2	0	2	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0030	3436	2	0	2	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0031	3436	2	2	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0032	3436	2	2	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0033	3436	2	2	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0034	3436	2	2	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0035	3436	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0036	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0037	3435	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0038	3435	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0039	3436	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0040	3436	1	0	0	0	0	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0041	3436	1	0	0	0	0	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0042	3436	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0043	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0044	3436	1	0	0	0	0	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0045	3436	1	0	1	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0046	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0047	3435	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0048	3435	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0049	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906