Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF845_chr19_53328749_53361906	0/0	t0050	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0051	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0052	3436	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0053	3436	1	0	0	0	0	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0054	3436	1	0	1	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0055	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0056	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0057	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0058	3436	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0059	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0060	3435	1	0	0	0	0	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	1/0	t0061	3436	1	0	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0062	1838	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0063	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0064	3436	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0065	3436	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0066	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0067	3436	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0068	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0069	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0070	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0071	3435	1	0	0	0	0	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0072	3436	1	0	1	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	t0073	3436	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF846_chr19_9750357_9773738	0/0	t0001	2648	26	0	0	21	1	4	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/1	t0002	2649	16	1	2	10	0	2	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0003	2650	16	2	3	5	2	4	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0004	2651	13	3	6	3	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0005	2650	12	0	5	5	1	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	1/0	t0006	2654	9	0	2	2	1	3	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0007	2648	9	7	1	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0008	2652	8	2	2	2	2	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0009	536	7	6	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0010	2646	7	4	1	2	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0011	2626	6	0	6	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0012	2672	5	1	4	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0013	2649	5	1	0	4	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0014	2655	5	0	1	3	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0015	2650	5	1	1	3	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0016	2653	4	0	0	4	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0017	2651	4	0	1	2	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0018	2652	4	0	0	4	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0019	2658	4	0	1	0	0	3	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0020	2648	4	0	0	4	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0021	2635	4	3	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0022	2635	3	3	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0023	2673	3	0	2	0	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0024	2680	3	0	2	0	1	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0025	2650	3	0	0	3	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0026	2648	3	1	0	1	0	1	copy fasta	ZNF846	chr19	9750357	9773738