Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF846_chr19_9750357_9773738	0/0	t0027	2646	3	1	0	2	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0028	2652	3	0	1	1	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0029	2653	3	0	1	2	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0030	2653	3	0	1	1	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0031	2656	3	1	0	2	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0032	2657	3	0	3	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0033	2649	3	0	0	2	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0034	2651	3	0	1	1	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0035	2648	3	0	0	3	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0036	2634	3	3	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0037	2636	3	0	0	3	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0038	2670	2	0	2	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0039	2677	2	0	2	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0040	2647	2	2	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0041	2638	2	2	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0042	2649	2	0	0	2	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0043	2645	2	0	0	2	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0044	2627	2	2	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0045	2647	2	0	0	1	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0046	2650	2	1	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0047	2651	2	1	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0048	2644	2	0	0	0	2	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0049	2656	2	0	2	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0050	2652	2	0	1	0	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0051	2655	2	0	1	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0052	2656	2	2	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0053	2650	2	2	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0054	2654	2	0	0	2	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0055	2649	2	0	0	2	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0056	2649	2	0	0	2	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0057	2657	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0058	2659	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0059	2663	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0060	2664	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0061	2671	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0062	2672	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0063	2675	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0064	2650	1	0	0	0	1	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0065	2651	1	0	0	0	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0066	2648	1	0	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0067	2651	1	0	0	0	1	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0068	2654	1	0	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0069	2652	1	0	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0070	2649	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0071	2654	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0072	2679	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0073	2672	1	0	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0074	2674	1	0	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0075	2675	1	0	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0076	2681	1	0	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738