Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF846_chr19_9750357_9773738	0/0	t0077	2681	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0078	2682	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0079	2691	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0080	2644	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0081	2645	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0082	2660	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0083	2661	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0084	2662	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0085	2666	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0086	2668	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0087	2642	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0088	2654	1	0	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0089	2649	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0090	2652	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0091	2628	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0092	2629	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0093	2632	1	0	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0094	2625	1	0	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0095	2637	1	0	0	0	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0096	2647	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0097	2643	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0098	2644	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0099	2637	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0100	2650	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0101	2651	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0102	2648	1	0	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0103	2440	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0104	2635	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0105	2651	1	0	0	0	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0106	2648	1	0	0	0	1	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0107	2635	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0108	2647	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0109	2648	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0110	2643	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0111	2653	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0112	2633	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0113	2654	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0114	2654	1	0	0	0	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0115	2655	1	0	0	0	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0116	2651	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0117	2647	1	0	0	0	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0118	2655	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0119	2654	1	0	0	0	1	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0120	2655	1	0	0	0	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0121	2648	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0122	2657	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0123	2656	1	0	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0124	2657	1	0	0	0	0	1	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0125	2660	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	t0126	2655	1	0	0	0	1	0	copy fasta	ZNF846	chr19	9750357	9773738