Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF84_chr12_133032509_133068299	0/0	t0008	4595	10	10	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0009	4595	8	8	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0010	4595	7	6	1	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0011	4593	7	4	3	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0012	4595	5	0	1	0	1	3	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0013	4595	4	4	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0014	4595	3	3	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0015	4595	3	3	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0016	4595	3	2	1	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0017	4595	2	2	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0018	4595	2	2	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0019	4595	2	2	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0020	4595	2	2	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0021	4595	2	0	2	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0022	4595	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0023	4595	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0024	4595	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0025	4595	1	0	0	1	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0026	4595	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0027	4595	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0028	4595	1	0	1	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0029	4595	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0030	4595	1	0	1	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0031	4595	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0032	4595	1	0	0	1	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0033	4595	1	0	0	1	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0034	4595	1	0	0	1	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0035	4595	1	0	0	1	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0036	4595	1	0	0	0	0	1	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0037	4595	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0038	4595	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	t0039	4595	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF850_chr19_36738480_36777807	0/1	t0001	4430	154	12	25	93	5	18	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	1/0	t0002	4440	64	6	11	28	4	14	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0003	4434	54	12	18	15	3	6	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0004	4432	24	6	3	14	0	1	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0005	4440	10	6	3	0	1	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0006	4434	9	6	2	0	0	1	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0007	4436	6	0	0	6	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0008	4439	6	0	5	0	0	1	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0009	4438	6	6	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0010	4438	5	5	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0011	4442	4	4	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0012	4430	4	4	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0013	4430	4	0	0	4	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0014	4429	3	0	0	1	1	1	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0015	4441	3	0	0	3	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0016	4434	3	3	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0017	4430	3	0	3	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0018	4432	3	0	0	3	0	0	copy fasta	ZNF850	chr19	36738480	36777807