Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF850_chr19_36738480_36777807	0/0	t0019	4435	3	3	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0020	4430	2	0	0	2	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0021	4434	2	2	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0022	4439	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0023	4433	1	0	0	1	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0024	4433	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0025	4439	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0026	4437	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0027	4439	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0028	4441	1	0	0	1	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0029	4440	1	0	0	1	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0030	4430	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0031	4430	1	0	0	0	0	1	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0032	4430	1	0	1	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0033	4431	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0034	4430	1	0	1	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0035	4430	1	0	0	0	0	1	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0036	4434	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0037	4435	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0038	4434	1	0	0	1	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0039	4434	1	0	0	0	0	1	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0040	4434	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0041	4434	1	0	1	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0042	4434	1	0	0	1	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0043	4435	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0044	4435	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0045	4434	1	0	1	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0046	4436	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0047	4436	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0048	4434	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	t0049	4440	1	0	0	0	0	1	copy fasta	ZNF850	chr19	36738480	36777807
ZNF853_chr7_6610610_6629290	0/0	t0001	1885	165	30	14	89	5	27	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/1	t0002	1885	98	26	25	36	4	6	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	1/0	t0003	1885	80	3	30	32	9	5	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0004	1885	31	10	3	17	0	1	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0005	1885	11	6	1	4	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0006	1885	5	1	2	2	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0007	1885	5	5	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0008	1885	3	1	2	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0009	1885	3	3	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0010	1885	3	3	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0011	1885	2	2	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0012	1885	2	0	0	0	0	2	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0013	1885	1	0	1	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0014	1885	1	1	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0015	1885	1	0	1	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0016	1885	1	0	0	0	0	1	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0017	1885	1	1	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0018	1885	1	0	0	1	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0019	1885	1	1	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290