JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C4orf36_chr4_86871205_86897422	0/0	t0006	555	6	1	4	0	1	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	t0007	555	3	3	0	0	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	t0008	556	1	0	1	0	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	t0009	555	1	0	1	0	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	t0010	555	1	0	0	1	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	t0011	555	1	0	0	1	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	t0012	555	1	1	0	0	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	t0013	555	1	1	0	0	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	t0014	555	1	1	0	0	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	t0015	555	1	0	0	0	0	1	copy fasta	C4orf36	chr4	86871205	86897422
C4orf3_chr4_119291419_119305645	1/1	t0001	2471	181	46	23	80	12	18	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0002	2471	128	23	27	66	4	8	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0003	2471	79	4	18	47	1	9	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0004	2471	9	9	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0005	2471	5	0	0	5	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0006	2471	3	0	2	0	0	1	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0007	2471	2	1	0	0	1	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0008	2471	2	0	0	0	0	2	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0009	2471	2	1	1	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0010	2471	2	0	0	2	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0011	2471	2	2	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0012	2471	1	1	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0013	2471	1	1	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0014	2461	1	0	0	0	0	1	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0015	2471	1	0	0	0	0	1	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0016	2471	1	0	0	1	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0017	2471	1	1	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0018	2471	1	0	0	1	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0019	2471	1	0	1	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	t0020	2471	1	1	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf45_chr4_158888134_159040229	1/1	t0001	703	251	82	57	60	14	36	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/0	t0002	703	8	7	1	0	0	0	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/0	t0003	703	3	3	0	0	0	0	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/0	t0004	703	1	1	0	0	0	0	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/0	t0005	1079	1	1	0	0	0	0	copy fasta	C4orf45	chr4	158888134	159040229
C4orf46_chr4_158661675_158676887	0/0	t0001	3025	125	4	33	70	8	10	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0002	3025	85	43	15	14	3	10	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/1	t0003	3025	73	5	14	29	3	21	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	1/0	t0004	3025	36	33	2	0	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0005	3025	8	0	0	8	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0006	3025	6	0	0	6	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0007	3025	5	0	0	5	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0008	3025	4	0	0	4	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0009	3025	4	4	0	0	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0010	3025	3	2	1	0	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0011	3019	3	3	0	0	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0012	3025	1	0	0	0	0	1	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0013	3025	1	0	0	1	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0014	3025	1	0	0	1	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0015	3025	1	0	0	1	0	0	copy fasta	C4orf46	chr4	158661675	158676887