Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF862_chr7_149833375_149872479	0/0	t0014	3433	4	0	0	4	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0015	3347	4	0	2	0	2	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0016	3347	3	3	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0017	3431	3	2	1	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0018	3431	3	3	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0019	3431	3	3	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0020	3349	3	0	1	2	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0021	3431	3	3	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0022	3349	2	2	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0023	3433	2	0	0	2	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0024	3433	2	0	1	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0025	3433	2	2	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0026	3349	2	1	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0027	3347	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0028	3347	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0029	3431	1	1	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0030	3349	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0031	3433	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0032	3433	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0033	3433	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0034	3433	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0035	3347	1	0	1	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0036	3431	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0037	3347	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0038	3347	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0039	3347	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0040	3368	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0041	3349	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0042	3431	1	1	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0043	3347	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0044	3433	1	0	1	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0045	3433	1	0	1	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0046	3347	1	0	1	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF865_chr19_55600647_55622269	1/1	t0001	584	396	94	79	167	14	40	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	t0002	585	15	1	3	5	1	5	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	t0003	584	5	1	4	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	t0004	584	4	4	0	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	t0005	584	2	0	0	0	0	2	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	t0006	584	2	0	1	0	0	1	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	t0007	534	1	0	0	0	1	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	t0008	584	1	0	0	1	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	t0009	584	1	0	0	1	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	t0010	585	1	0	1	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	t0011	584	1	0	0	1	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	t0012	585	1	0	0	1	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF875_chr19_37329649_37369447	1/1	t0001	863	267	66	55	107	15	22	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	t0002	863	99	20	11	57	1	10	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	t0003	863	11	0	6	4	0	1	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	t0004	863	2	2	0	0	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	t0005	863	1	0	0	1	0	0	copy fasta	ZNF875	chr19	37329649	37369447