Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF883_chr9_112983129_113017192	0/0	t0065	10230	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0066	10230	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0067	10230	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0068	10231	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0069	10231	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/1	t0070	10231	1	0	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0071	10231	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0072	10231	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0073	10231	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0074	10235	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0075	10220	1	0	0	0	0	1	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0076	10219	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0077	10222	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0078	10212	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0079	10222	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0080	10241	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0081	10220	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0082	10220	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0083	10220	1	0	1	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0084	10223	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0085	10222	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0086	10221	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0087	10221	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0088	10222	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0089	10222	1	0	1	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0090	10223	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0091	10223	1	0	0	0	1	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0092	10227	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0093	10227	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0094	10228	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0095	10223	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0096	10231	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0097	10226	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0098	10228	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0099	10229	1	0	0	0	1	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0100	10229	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0101	10229	1	0	1	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0102	10232	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0103	10233	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0104	10220	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0105	10233	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0106	10233	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0107	10233	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0108	10227	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0109	10227	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0110	10227	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0111	10227	1	0	1	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0112	10227	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0113	10227	1	0	1	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0114	10227	1	0	0	0	0	1	copy fasta	ZNF883	chr9	112983129	113017192