JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C4orf46_chr4_158661675_158676887	0/0	t0016	3025	1	0	0	1	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0017	3025	1	0	0	1	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0018	3025	1	0	0	0	0	1	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0019	3025	1	0	0	1	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0020	3025	1	0	1	0	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0021	3025	1	0	0	1	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0022	3025	1	0	1	0	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0023	3025	1	1	0	0	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0024	3025	1	0	0	1	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0025	3025	1	0	1	0	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0026	3025	1	1	0	0	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0027	3025	1	0	0	0	0	1	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0028	3019	1	1	0	0	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	t0029	3019	1	1	0	0	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf47_chr4_185421254_185454826	0/1	t0001	404	255	48	47	118	9	32	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	t0002	404	40	24	1	8	1	6	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	t0003	404	38	3	14	14	4	3	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	t0004	404	17	13	3	0	0	1	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	1/0	t0005	404	3	2	0	0	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	t0006	404	3	2	1	0	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	t0007	404	2	2	0	0	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf48_chr4_2036995_2048964	1/1	t0001	138	391	92	76	173	12	36	copy fasta	C4orf48	chr4	2036995	2048964
C4orf48_chr4_2036995_2048964	0/0	t0002	138	1	0	0	1	0	0	copy fasta	C4orf48	chr4	2036995	2048964
C4orf54_chr4_99631529_99662828	1/1	t0001	5070	122	9	38	55	5	13	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0002	5070	98	7	10	69	0	12	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0003	5070	60	7	5	47	0	1	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0004	5070	20	12	6	2	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0005	5069	13	10	1	0	0	2	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0006	5070	9	8	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0007	5070	6	0	2	1	1	2	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0008	5070	5	5	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0009	5069	4	4	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0010	5070	4	4	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0011	5070	4	4	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0012	5070	3	3	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0013	5070	3	0	3	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0014	5070	3	3	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0015	5070	3	3	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0016	5069	2	2	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0017	5070	2	2	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0018	5070	2	0	0	2	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0019	5070	2	2	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0020	5070	2	1	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0021	5069	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0022	5070	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0023	5070	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0024	5070	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0025	5070	1	0	0	0	0	1	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0026	5070	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0027	5070	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828