Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF90_chr19_20073000_20126165	0/0	t0022	1939	1	0	0	1	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	t0023	1939	1	1	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	t0024	1938	1	0	1	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	t0025	1938	1	0	0	1	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	t0026	1940	1	0	0	1	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	t0027	1939	1	1	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF91_chr19_23352696_23400471	1/1	t0001	1825	106	23	30	29	8	14	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0002	1824	82	19	5	52	0	6	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0003	1825	64	0	7	51	2	4	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0004	1824	48	14	14	9	6	5	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0005	1825	13	9	1	3	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0006	1825	13	0	4	9	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0007	1825	12	11	1	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0008	1825	8	7	1	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0009	1824	4	4	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0010	1825	2	0	0	2	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0011	1825	2	2	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0012	1825	1	0	1	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0013	1825	1	1	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0014	1825	1	1	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0015	1825	1	0	0	0	0	1	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0016	1825	1	0	0	0	0	1	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0017	1825	1	0	0	0	0	1	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0018	1825	1	0	0	1	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0019	1824	1	0	0	0	0	1	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0020	1824	1	1	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0021	1824	1	1	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0022	1825	1	1	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	t0023	1824	1	0	0	0	0	1	copy fasta	ZNF91	chr19	23352696	23400471
ZNF92_chr7_65368855_65406136	0/0	t0001	1405	134	53	23	52	0	6	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	1/0	t0002	1405	123	21	10	68	4	19	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	t0003	1405	64	8	13	36	1	6	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	t0004	1405	39	0	5	34	0	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/1	t0005	1405	37	3	18	1	5	9	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	t0006	1405	3	3	0	0	0	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	t0007	1405	3	0	2	0	1	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	t0008	1405	1	0	0	0	1	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	t0009	1405	1	0	0	1	0	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	t0010	1405	1	0	0	1	0	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	t0011	1405	1	1	0	0	0	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	t0012	1405	1	0	1	0	0	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	t0013	1405	1	0	0	1	0	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	t0014	1405	1	1	0	0	0	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF93_chr19_19895946_19940575	1/1	t0001	901	137	9	38	59	7	22	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	t0002	901	89	8	7	66	1	7	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	t0003	901	65	18	10	35	0	2	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	t0004	901	48	19	2	21	1	5	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	t0005	901	34	24	5	3	1	1	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	t0006	901	3	0	3	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	t0007	901	3	0	0	0	0	3	copy fasta	ZNF93	chr19	19895946	19940575