Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF93_chr19_19895946_19940575	0/0	t0008	901	3	3	0	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	t0009	901	2	2	0	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	t0010	901	2	2	0	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	t0011	901	1	0	1	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	t0012	901	1	1	0	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF98_chr19_22386019_22427346	1/0	t0001	620	239	61	44	100	8	25	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	t0002	620	127	27	22	60	8	10	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/1	t0003	620	3	0	2	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	t0004	620	3	0	0	3	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	t0005	620	3	3	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	t0006	620	1	0	0	0	0	1	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	t0007	620	1	0	0	1	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	t0008	620	1	1	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF99_chr19_22747183_22789151	0/1	t0001	5268	120	14	19	70	5	11	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0002	5258	56	9	12	29	2	4	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0003	5183	34	1	4	25	0	4	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0004	4682	26	2	1	23	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0005	5268	16	15	1	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0006	5269	11	1	3	3	1	3	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0007	4682	10	10	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0008	4632	6	6	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	1/0	t0009	5267	6	3	0	2	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0010	4682	4	4	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0011	5182	4	0	1	0	2	1	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0012	4676	3	3	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0013	4681	3	3	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0014	4682	3	2	1	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0015	5184	3	3	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0016	4676	2	2	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0017	5269	2	1	1	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0018	5268	2	0	2	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0019	5267	2	0	0	1	0	1	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0020	5268	2	0	2	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0021	5257	2	0	0	2	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0022	5184	2	0	2	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0023	5183	2	0	0	2	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0024	4676	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0025	4682	1	0	1	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0026	4681	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0027	4386	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0028	5267	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0029	5268	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0030	5269	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0031	5268	1	0	1	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0032	5268	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0033	5268	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0034	5268	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0035	5268	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0036	5268	1	0	1	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0037	5268	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151