Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNHIT6_chr1_85644417_85713433	0/0	t0019	4790	2	0	0	2	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0020	4791	2	2	0	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0021	4791	2	2	0	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0022	4791	2	1	1	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0023	4790	2	1	0	1	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0024	4790	2	2	0	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0025	4791	2	0	0	2	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0026	4791	1	0	0	1	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0027	4791	1	0	0	1	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0028	4791	1	0	0	1	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0029	4791	1	1	0	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0030	4791	1	0	0	1	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0031	4791	1	1	0	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0032	4791	1	1	0	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0033	4791	1	0	0	1	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0034	4791	1	0	0	0	0	1	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0035	4791	1	0	0	1	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0036	4790	1	0	0	1	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0037	4791	1	1	0	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0038	4791	1	0	1	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0039	4791	1	1	0	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0040	4791	1	0	1	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0041	4791	1	1	0	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0042	4791	1	0	0	1	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0043	4791	1	0	0	0	1	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0044	4791	1	0	0	1	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0045	4791	1	1	0	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0046	4791	1	0	1	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNRD2_chr11_65565477_65576888	1/0	t0001	170	249	60	48	95	12	33	copy fasta	ZNRD2	chr11	65565477	65576888
ZNRD2_chr11_65565477_65576888	0/1	t0002	170	106	32	14	50	4	5	copy fasta	ZNRD2	chr11	65565477	65576888
ZNRD2_chr11_65565477_65576888	0/0	t0003	170	5	0	0	5	0	0	copy fasta	ZNRD2	chr11	65565477	65576888
ZNRF1_chr16_74994024_75115994	0/0	t0001	3943	101	20	19	37	4	21	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/1	t0002	3943	61	6	14	23	5	12	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0003	3944	43	7	8	22	3	3	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0004	3941	17	1	8	3	1	4	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0005	3943	14	12	1	0	0	1	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0006	3944	13	11	2	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0007	3941	12	11	1	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	1/0	t0008	3943	10	5	1	2	0	1	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0009	3941	7	0	0	7	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0010	3943	6	0	0	6	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0011	3943	5	5	0	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0012	3939	3	3	0	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0013	3943	3	0	0	3	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0014	3943	2	0	2	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0015	3943	2	0	0	2	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0016	3943	2	2	0	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0017	3943	2	2	0	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0018	3943	2	0	0	2	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0019	3944	2	2	0	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994