Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNRF1_chr16_74994024_75115994	0/0	t0020	3944	2	2	0	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0021	3943	2	2	0	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0022	3943	1	0	0	0	0	1	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0023	3943	1	1	0	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0024	3943	1	0	1	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0025	3943	1	1	0	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0026	3943	1	0	0	1	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0027	3943	1	0	1	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0028	3943	1	0	0	1	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0029	3943	1	1	0	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0030	3943	1	1	0	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0031	3943	1	1	0	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0032	3944	1	0	0	0	1	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0033	3941	1	1	0	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0034	3943	1	0	0	1	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0035	3943	1	0	0	1	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0036	3943	1	1	0	0	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0037	3944	1	0	0	0	0	1	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	t0038	3944	1	0	0	1	0	0	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF2_chr7_30279597_30372689	1/1	t0001	2439	136	43	30	42	4	15	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0002	2439	18	5	1	12	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0003	2439	8	7	1	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0004	2439	7	3	4	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0005	2439	6	5	1	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0006	2439	5	5	0	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0007	2439	5	5	0	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0008	2439	3	0	0	2	0	1	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0009	2439	3	3	0	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0010	2439	3	3	0	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0011	2439	2	0	2	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0012	2439	2	2	0	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0013	2439	1	1	0	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0014	2439	1	0	0	1	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0015	2439	1	1	0	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0016	2439	1	0	0	1	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0017	2439	1	1	0	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0018	2439	1	0	0	1	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0019	2439	1	0	1	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0020	2439	1	1	0	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0021	2439	1	0	0	1	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	t0022	2439	1	1	0	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF3_chr22_28878572_29062488	0/1	t0001	4068	90	7	16	49	1	16	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	1/0	t0002	4062	55	21	8	21	2	2	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0003	4062	25	0	3	16	1	5	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0004	4066	12	0	0	7	1	4	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0005	4065	10	0	0	10	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0006	4068	9	0	0	8	0	1	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0007	4068	8	8	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0008	4068	7	6	0	1	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0009	4068	6	3	3	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488