Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNRF3_chr22_28878572_29062488	0/0	t0010	4068	5	5	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0011	4068	3	3	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0012	4070	3	3	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0013	4063	3	3	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0014	4068	3	2	1	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0015	4067	2	2	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0016	4068	2	0	0	1	0	1	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0017	4067	2	2	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0018	4068	2	0	1	0	1	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0019	4069	2	2	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0020	4062	1	0	1	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0021	4063	1	0	1	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0022	4064	1	0	0	1	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0023	4068	1	1	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0024	4067	1	1	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0025	4068	1	1	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0026	4068	1	0	1	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0027	4068	1	1	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0028	4068	1	1	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0029	4068	1	0	0	1	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0030	4068	1	1	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0031	4062	1	0	0	1	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0032	4068	1	0	1	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0033	4062	1	0	0	1	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0034	4062	1	0	0	1	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0035	4062	1	1	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0036	4063	1	1	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0037	4063	1	0	0	0	0	1	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0038	4062	1	0	0	0	0	1	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0039	4068	1	1	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	t0040	4066	1	0	0	0	0	1	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF4_chr19_5450417_5461856	1/1	t0001	151	400	73	80	179	18	48	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	t0002	151	16	0	0	16	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	t0003	151	9	9	0	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	t0004	151	4	4	0	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	t0005	151	3	3	0	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	t0006	151	1	0	0	1	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	t0007	151	1	1	0	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZP1_chr11_60862542_60880687	1/1	t0001	52	412	98	78	180	16	38	copy fasta	ZP1	chr11	60862542	60880687
ZP2_chr16_21192450_21216574	1/1	t0001	58	438	98	76	196	18	48	copy fasta	ZP2	chr16	21192450	21216574
ZP3_chr7_76419950_76447069	1/1	t0001	29	424	96	78	186	16	46	copy fasta	ZP3	chr7	76419950	76447069
ZP4_chr1_237877404_237895922	1/1	t0001	306	433	85	75	208	18	45	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	t0002	306	13	11	2	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	t0003	306	1	0	0	0	0	1	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	t0004	306	1	0	1	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZPBP2_chr17_39863202_39882896	1/1	t0001	1241	212	46	41	100	6	17	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	t0002	1241	124	17	31	58	5	13	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	t0003	1241	16	16	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	t0004	1241	11	11	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	t0005	1241	6	0	3	0	3	0	copy fasta	ZPBP2	chr17	39863202	39882896