Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZPBP2_chr17_39863202_39882896	0/0	t0006	1241	3	0	0	3	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	t0007	1241	2	2	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	t0008	1241	1	1	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	t0009	1241	1	1	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	t0010	1241	1	0	1	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	t0011	1241	1	1	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	t0012	1241	1	1	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	t0013	1241	1	0	0	1	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP_chr7_49932441_50098246	1/1	t0001	140	258	72	48	78	14	44	copy fasta	ZPBP	chr7	49932441	50098246
ZPBP_chr7_49932441_50098246	0/0	t0002	140	20	0	0	20	0	0	copy fasta	ZPBP	chr7	49932441	50098246
ZPLD1_chr3_102430015_102484841	0/0	t0001	2515	115	37	12	50	2	14	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0002	2515	34	2	11	4	8	9	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	1/1	t0003	2486	22	1	3	13	0	3	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0004	2486	18	18	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0005	2515	10	0	4	2	2	2	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0006	2486	9	7	1	0	0	1	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0007	2486	8	0	8	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0008	2516	7	6	1	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0009	2515	6	6	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0010	2515	6	0	0	6	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0011	2486	5	3	2	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0012	2515	4	0	3	0	1	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0013	2486	3	2	1	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0014	2515	3	0	0	3	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0015	2486	2	2	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0016	2515	2	0	1	0	1	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0017	2515	1	1	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0018	2515	1	1	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0019	2486	1	0	1	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0020	2516	1	1	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0021	2515	1	0	0	1	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0022	2486	1	0	0	0	0	1	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0023	2515	1	0	1	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0024	2515	1	0	0	1	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0025	2486	1	1	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0026	2486	1	1	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0027	2486	1	1	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0028	2516	1	0	1	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0029	2486	1	1	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	t0030	2486	1	1	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPR1_chr11_116768799_116793023	0/0	t0001	5137	43	10	3	29	0	1	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0002	5153	36	0	6	23	2	5	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0003	5157	34	4	9	15	3	3	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/1	t0004	5158	33	4	5	19	0	4	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	1/0	t0005	5160	27	1	4	18	1	2	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0006	5161	21	0	1	17	1	2	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0007	5140	20	9	7	0	2	2	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0008	5154	16	1	1	14	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0009	5162	14	0	0	12	0	2	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0010	5159	12	1	0	10	0	1	copy fasta	ZPR1	chr11	116768799	116793023