Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACVR1B_chr12_51946699_52002078	0/0	t0030	3012	1	1	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0031	3012	1	0	0	1	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1C_chr2_157521767_157633864	0/0	t0001	7372	74	18	15	24	8	9	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0002	7372	23	12	11	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	1/0	t0003	7372	23	4	4	7	2	5	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0004	7373	14	0	0	14	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0005	7373	13	7	1	0	2	3	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0006	7373	8	8	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/1	t0007	7372	8	1	3	0	3	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0008	7372	7	7	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0009	7373	6	4	2	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0010	7372	4	4	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0011	7372	3	3	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0012	7372	3	3	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0013	7373	2	2	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0014	7372	2	2	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0015	7372	2	0	1	0	1	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0016	7373	2	2	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0017	7372	2	2	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0018	7372	1	0	0	0	0	1	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0019	7372	1	0	0	0	0	1	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0020	7373	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0021	7373	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0022	7374	1	0	1	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0023	7373	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0024	7373	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0025	7372	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0026	7372	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0027	7372	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0028	7361	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0029	7372	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0030	7372	1	0	0	0	0	1	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0031	7372	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0032	7372	1	0	0	1	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0033	7372	1	0	0	1	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0034	7372	1	0	1	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0035	7372	1	0	0	1	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0036	7373	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	t0037	7372	1	0	1	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1_chr2_157731446_157881330	0/0	t0001	1803	68	37	5	17	1	8	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	1/1	t0002	1803	48	2	7	27	3	7	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0003	1803	13	12	1	0	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0004	1809	8	5	1	2	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0005	1803	6	2	1	0	0	3	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0006	1803	6	6	0	0	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0007	1803	3	1	0	0	2	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0008	1803	3	3	0	0	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0009	1803	3	3	0	0	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0010	1803	2	0	2	0	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0011	1803	2	2	0	0	0	0	copy fasta	ACVR1	chr2	157731446	157881330