JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C4orf54_chr4_99631529_99662828	0/0	t0028	5070	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0029	5069	1	0	0	0	0	1	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0030	5069	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0031	5070	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0032	5070	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0033	5070	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0034	5070	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0035	5070	1	0	0	0	0	1	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0036	5070	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0037	5070	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0038	5070	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0039	5070	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0040	5070	1	0	0	0	0	1	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0041	5070	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0042	5070	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0043	5070	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0044	5070	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	t0045	5070	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C5AR1_chr19_47304861_47327066	0/1	t0001	1271	218	58	44	85	9	21	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0002	1271	89	19	17	38	2	13	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0003	1272	50	7	13	23	0	7	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0004	1271	2	0	0	2	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	1/0	t0005	1272	2	0	0	0	0	1	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0006	1272	2	0	0	2	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0007	1271	1	1	0	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0008	1271	1	1	0	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0009	1271	1	0	0	1	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0010	1271	1	1	0	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0011	1271	1	0	0	0	1	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0012	1271	1	1	0	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0013	1272	1	1	0	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0014	1272	1	0	1	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0015	1272	1	0	0	1	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0016	1271	1	1	0	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0017	1271	1	1	0	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0018	1282	1	0	1	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	t0019	1272	1	1	0	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR2_chr19_47327175_47352329	0/0	t0001	5711	101	20	23	43	4	11	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0002	5711	39	0	7	31	0	1	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0003	5711	36	5	8	14	1	8	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0004	5713	27	6	6	14	1	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0005	5704	20	12	3	0	0	5	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0006	5704	9	0	0	0	2	7	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0007	5711	8	0	0	8	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0008	5712	8	3	2	2	0	1	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0009	5704	7	2	4	0	0	1	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0010	5711	7	0	0	7	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0011	5704	6	6	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0012	5711	6	0	0	6	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0013	5710	6	0	3	2	1	0	copy fasta	C5AR2	chr19	47327175	47352329