Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZPR1_chr11_116768799_116793023	0/0	t0061	5154	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0062	5139	1	0	1	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0063	5139	1	0	1	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0064	5140	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0065	5136	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0066	5139	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0067	5155	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0068	5156	1	0	1	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0069	5157	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0070	5151	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0071	5152	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0072	5153	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0073	5154	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0074	5155	1	0	0	0	0	1	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0075	5158	1	0	0	0	0	1	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0076	5152	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0077	5152	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0078	5154	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0079	5157	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0080	5155	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0081	5158	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0082	5156	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0083	5157	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0084	5157	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0085	5157	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0086	5160	1	0	0	0	0	1	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0087	5160	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0088	5161	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0089	5155	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0090	5158	1	0	1	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0091	5160	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0092	5153	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0093	5155	1	0	1	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0094	5158	1	0	0	0	0	1	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0095	5163	1	0	0	0	1	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0096	5170	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0097	5158	1	0	1	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0098	5158	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0099	5156	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0100	5157	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0101	5159	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0102	5153	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0103	5154	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0104	5155	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0105	5156	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0106	5139	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	t0107	5154	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZRANB1_chr10_124937123_124993189	0/1	t0001	3553	58	13	9	32	0	3	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0002	3566	57	5	9	28	6	9	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0003	3568	29	3	2	22	0	2	copy fasta	ZRANB1	chr10	124937123	124993189