Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZRANB1_chr10_124937123_124993189	0/0	t0054	3579	1	1	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0055	3573	1	1	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0056	3580	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0057	3569	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0058	3593	1	1	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0059	3585	1	1	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0060	3581	1	1	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0061	3571	1	1	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0062	3573	1	1	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0063	3555	1	1	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0064	3566	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0065	3560	1	0	0	0	1	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0066	3554	1	0	0	0	0	1	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0067	3576	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0068	3572	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0069	3570	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0070	3568	1	0	0	0	0	1	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0071	3566	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0072	3556	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0073	3566	1	0	0	0	0	1	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0074	3574	1	1	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0075	3552	1	1	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0076	3572	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0077	3553	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0078	3553	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0079	3551	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	t0080	3584	1	1	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB2_chr1_71058291_71086035	0/0	t0001	1824	237	35	38	136	7	21	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	1/1	t0002	1824	147	42	35	36	7	25	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	0/0	t0003	1824	22	0	6	16	0	0	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	0/0	t0004	1824	8	7	1	0	0	0	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	0/0	t0005	1820	6	6	0	0	0	0	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	0/0	t0006	1824	5	4	1	0	0	0	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	0/0	t0007	1824	3	0	0	3	0	0	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	0/0	t0008	1824	2	2	0	0	0	0	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	0/0	t0009	1824	1	1	0	0	0	0	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	0/0	t0010	1824	1	0	1	0	0	0	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	0/0	t0011	1824	1	0	0	1	0	0	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	0/0	t0012	1820	1	1	0	0	0	0	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB3_chr2_135191969_135536218	0/0	t0001	3473	59	12	7	29	0	11	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0002	3474	56	10	5	31	0	10	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0003	3473	26	14	5	6	0	1	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0004	3473	16	16	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	1/0	t0005	3473	10	1	6	0	0	2	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0006	3474	8	0	3	0	0	5	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0007	3473	5	5	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0008	3473	4	1	3	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0009	3473	3	3	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0010	3474	3	0	3	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0011	3473	3	3	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218