Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZRANB3_chr2_135191969_135536218	0/0	t0012	3474	2	0	1	1	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0013	3473	2	0	0	2	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/1	t0014	3473	2	0	0	0	0	1	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0015	3473	2	2	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0016	3473	2	0	0	2	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0017	3473	1	1	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0018	3473	1	0	1	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0019	3473	1	1	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0020	3473	1	0	0	1	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0021	3473	1	1	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0022	3473	1	1	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0023	3473	1	0	0	1	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0024	3473	1	1	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0025	3473	1	0	0	1	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0026	3474	1	1	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	t0027	3473	1	1	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRSR2_chrX_15785484_15828260	1/1	t0001	31	322	76	56	147	11	30	copy fasta	ZRSR2	chrX	15785484	15828260
ZSCAN10_chr16_3083890_3104294	1/1	t0001	374	443	99	73	207	18	44	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	t0002	374	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	t0003	374	1	1	0	0	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	t0004	374	1	0	1	0	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN12_chr6_28379738_28404747	1/0	t0001	5876	111	2	20	66	3	19	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0002	5873	59	3	8	46	0	2	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0003	5873	52	9	6	36	0	1	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0004	5874	42	3	11	22	1	5	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/1	t0005	5873	31	13	3	4	4	6	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0006	5873	31	12	3	13	1	2	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0007	5873	27	14	7	5	0	1	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0008	5873	14	12	1	0	0	1	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0009	5873	6	6	0	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0010	5873	6	0	2	0	4	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0011	5873	5	5	0	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0012	5873	5	0	4	0	1	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0013	5874	4	0	0	4	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0014	5873	3	3	0	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0015	5873	3	3	0	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0016	5873	3	3	0	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0017	5876	3	0	0	3	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0018	5874	3	3	0	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0019	5876	2	0	0	2	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0020	5876	2	0	0	0	2	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0021	5876	2	0	0	2	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0022	5876	2	0	0	2	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0023	5873	2	2	0	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0024	5876	1	0	1	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0025	5873	1	0	0	0	0	1	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0026	5873	1	0	0	1	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0027	5873	1	0	1	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0028	5873	1	1	0	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0029	5873	1	0	1	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747