Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZSCAN12_chr6_28379738_28404747	0/0	t0030	5876	1	0	0	1	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0031	5876	1	0	0	0	0	1	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0032	5876	1	0	0	0	0	1	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0033	5873	1	0	0	1	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0034	5873	1	1	0	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0035	5873	1	1	0	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0036	5873	1	0	0	1	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	t0037	5874	1	0	0	1	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN16_chr6_28119609_28135082	1/1	t0001	233	428	94	64	212	14	42	copy fasta	ZSCAN16	chr6	28119609	28135082
ZSCAN18_chr19_58078856_58103231	1/1	t0001	1007	403	66	72	209	14	40	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	t0002	1007	27	6	8	0	4	9	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	t0003	1007	14	13	1	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	t0004	1007	5	5	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	t0005	1007	4	4	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	t0006	1007	2	2	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	t0007	1007	1	0	0	1	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	t0008	1007	1	1	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	t0009	1007	1	0	0	0	0	1	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	t0010	1007	1	0	1	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	t0011	1007	1	1	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	t0012	1007	1	1	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	t0013	1007	1	1	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN1_chr19_58029025_58059631	0/1	t0001	869	147	32	44	44	5	21	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	1/0	t0002	869	79	3	8	60	0	7	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	t0003	869	75	8	14	40	3	10	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	t0004	869	51	36	9	2	2	2	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	t0005	869	10	8	0	1	0	1	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	t0006	867	6	1	1	4	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	t0007	869	5	0	0	5	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	t0008	869	2	2	0	0	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	t0009	869	2	2	0	0	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	t0010	869	1	0	0	1	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	t0011	869	1	0	0	0	0	1	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	t0012	869	1	0	0	1	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN20_chr1_33467645_33506643	1/1	t0001	6325	86	8	16	45	2	13	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0002	6325	77	0	14	51	2	10	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0003	6320	56	13	10	22	3	8	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0004	6320	30	0	0	28	0	2	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0005	6319	27	3	0	22	0	2	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0006	6319	18	4	7	2	3	2	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0007	6319	7	5	2	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0008	6326	6	3	1	1	0	1	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0009	6320	5	5	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0010	6316	5	5	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0011	6318	4	0	0	4	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0012	6320	4	1	0	2	0	1	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0013	6317	4	1	2	0	0	1	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0014	6320	4	0	0	0	3	1	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0015	6320	4	4	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0016	6320	3	0	0	0	0	3	copy fasta	ZSCAN20	chr1	33467645	33506643