Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZSCAN20_chr1_33467645_33506643	0/0	t0017	6318	3	3	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0018	6317	3	1	2	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0019	6316	3	3	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0020	6321	3	3	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0021	6320	3	3	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0022	6319	3	3	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0023	6324	3	2	1	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0024	6325	3	0	2	0	1	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0025	6320	2	2	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0026	6319	2	0	1	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0027	6320	2	0	0	2	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0028	6320	2	0	2	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0029	6325	2	0	0	2	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0030	6326	2	1	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0031	6325	2	0	1	0	1	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0032	6320	1	0	0	0	0	1	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0033	6325	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0034	6319	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0035	6320	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0036	6320	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0037	6320	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0038	6317	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0039	6321	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0040	6319	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0041	6319	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0042	6320	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0043	6320	1	0	1	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0044	6320	1	0	0	0	1	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0045	6320	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0046	6321	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0047	6317	1	0	1	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0048	6319	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0049	6320	1	0	1	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0050	6318	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0051	6318	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0052	6320	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0053	6320	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0054	6320	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0055	6317	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0056	6320	1	0	1	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0057	6320	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0058	6320	1	0	0	0	1	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0059	6320	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0060	6320	1	0	0	0	0	1	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0061	6325	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0062	6325	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0063	6325	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0064	6324	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0065	6325	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0066	6325	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643