Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZSCAN20_chr1_33467645_33506643	0/0	t0067	6327	1	0	1	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0068	6325	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0069	6325	1	0	0	0	1	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0070	6325	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0071	6327	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0072	6325	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0073	6325	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0074	6327	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	t0075	6325	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN21_chr7_100044774_100070040	0/0	t0001	588	143	11	22	84	5	21	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	1/1	t0002	588	129	58	28	23	6	12	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	t0003	584	105	11	20	58	3	13	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	t0004	588	4	0	0	4	0	0	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	t0005	588	3	3	0	0	0	0	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	t0006	588	3	3	0	0	0	0	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	t0007	584	3	0	0	3	0	0	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	t0008	588	1	0	0	1	0	0	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	t0009	588	1	0	0	1	0	0	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN22_chr19_58321994_58347332	0/1	t0001	3180	261	36	61	117	14	32	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0002	3189	51	18	2	26	3	2	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0003	3181	20	7	4	7	0	2	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0004	3189	10	1	9	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0005	3174	8	0	4	4	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0006	3180	5	5	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0007	3180	4	3	1	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0008	3181	4	1	1	0	0	2	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	1/0	t0009	3179	3	0	0	2	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0010	3180	3	3	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0011	3190	2	1	0	1	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0012	3181	2	2	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0013	3180	2	2	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0014	3180	2	0	0	0	0	2	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0015	3180	2	0	0	1	1	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0016	3180	1	0	1	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0017	3180	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0018	3187	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0019	3187	1	0	1	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0020	3188	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0021	3189	1	0	0	1	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0022	3179	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0023	3181	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0024	3181	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0025	3181	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0026	3180	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0027	3180	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0028	3180	1	0	0	1	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0029	3180	1	0	0	1	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0030	3180	1	0	0	1	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0031	3181	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0032	3181	1	0	1	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332