Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZSCAN26_chr6_28262143_28283204	0/1	t0001	1246	221	75	37	86	7	15	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	1/0	t0002	1246	129	3	27	66	7	25	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	t0003	1245	57	5	8	43	0	1	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	t0004	1246	4	4	0	0	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	t0005	1246	2	0	2	0	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	t0006	1246	2	2	0	0	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	t0007	1245	1	0	0	1	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	t0008	1245	1	0	0	1	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	t0009	1246	1	1	0	0	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	t0010	1246	1	0	0	0	0	1	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	t0011	1246	1	1	0	0	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	t0012	1246	1	0	0	1	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	t0013	1246	1	0	0	1	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	t0014	1246	1	1	0	0	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	t0015	1245	1	0	0	1	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN29_chr15_43353175_43376043	0/1	t0001	3509	78	1	19	48	4	5	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0002	3491	63	15	8	31	1	8	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0003	3491	57	32	2	20	0	3	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0004	3491	48	7	2	39	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0005	3515	20	0	5	11	1	3	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0006	3503	20	2	4	10	1	3	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0007	3493	20	5	6	0	4	5	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0008	3509	11	0	0	8	0	3	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0009	3521	9	0	0	6	0	3	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0010	3492	8	6	1	0	0	1	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0011	3510	4	0	0	4	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	1/0	t0012	3497	4	0	0	1	0	2	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0013	3497	4	3	1	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0014	3533	3	0	0	3	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0015	3527	3	0	1	1	1	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0016	3492	3	0	0	3	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0017	3497	2	2	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0018	3539	2	1	0	1	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0019	3522	2	0	0	2	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0020	3492	2	2	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0021	3492	2	2	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0022	3491	2	0	0	2	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0023	3491	2	2	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0024	3491	2	2	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0025	3509	1	0	1	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0026	3521	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0027	3515	1	0	1	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0028	3515	1	0	0	1	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0029	3515	1	0	0	1	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0030	3509	1	0	0	1	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0031	3509	1	0	1	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0032	3509	1	0	1	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0033	3510	1	0	0	1	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0034	3503	1	0	0	1	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0035	3493	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043