Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZSCAN29_chr15_43353175_43376043	0/0	t0036	3493	1	0	1	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0037	3491	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0038	3491	1	0	0	0	0	1	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0039	3491	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0040	3491	1	0	0	1	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0041	3491	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0042	3491	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0043	3491	1	0	0	1	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0044	3491	1	0	0	1	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0045	3493	1	0	0	0	0	1	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0046	3491	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	t0047	3491	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN2_chr15_84596009_84628716	1/0	t0001	1912	315	73	45	146	13	37	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0002	1912	41	1	14	20	1	5	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0003	1912	9	2	5	2	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0004	1912	7	7	0	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0005	1912	6	0	0	0	0	6	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0006	1912	5	5	0	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0007	1912	3	3	0	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0008	1912	2	0	0	2	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0009	1912	2	2	0	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/1	t0010	1912	2	0	0	1	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0011	1912	2	0	2	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0012	1912	1	0	0	1	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0013	1912	1	1	0	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0014	1944	1	0	0	1	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0015	1912	1	1	0	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0016	1912	1	0	0	1	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0017	1912	1	1	0	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0018	1912	1	0	0	1	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0019	1912	1	1	0	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0020	1912	1	0	1	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0021	1912	1	1	0	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0022	1912	1	0	0	1	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0023	1912	1	1	0	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0024	1912	1	0	1	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	t0025	1912	1	1	0	0	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN30_chr18_35246062_35295229	1/0	t0001	2638	121	20	10	85	1	4	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0002	2638	89	16	25	33	9	6	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0003	2638	78	6	15	45	4	8	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/1	t0004	2638	37	14	6	7	1	8	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0005	2638	17	16	0	1	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0006	2638	9	1	4	1	1	2	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0007	2638	5	5	0	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0008	2638	4	4	0	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0009	2638	4	4	0	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0010	2638	2	2	0	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0011	2638	1	1	0	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0012	2638	1	1	0	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0013	2638	1	1	0	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229