JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C5AR2_chr19_47327175_47352329	0/0	t0014	5712	5	0	0	5	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	1/0	t0015	5707	4	0	1	1	1	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0016	5712	4	0	1	1	0	2	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0017	5711	4	4	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0018	5710	4	0	1	3	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0019	5715	4	0	0	4	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0020	5715	3	0	0	3	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0021	5709	3	0	3	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0022	5711	3	0	0	3	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0023	5713	3	0	1	0	0	2	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0024	5715	3	2	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0025	5711	3	0	0	3	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0026	5707	2	2	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0027	5713	2	2	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0028	5711	2	0	0	2	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0029	5712	2	0	0	2	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0030	5714	2	0	0	2	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0031	5712	2	0	1	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0032	5711	2	0	0	0	0	2	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0033	5713	2	2	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/1	t0034	5704	2	0	0	0	1	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0035	5711	2	2	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0036	5712	2	1	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0037	5711	2	0	2	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0038	5711	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0039	5708	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0040	5710	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0041	5708	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0042	5710	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0043	5710	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0044	5760	1	0	0	0	0	1	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0045	5715	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0046	5716	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0047	5717	1	0	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0048	5704	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0049	5711	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0050	5713	1	0	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0051	5717	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0052	5711	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0053	5711	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0054	5711	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0055	5704	1	0	0	0	0	1	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0056	5716	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0057	5710	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0058	5711	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0059	5712	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0060	5711	1	0	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0061	5710	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0062	5711	1	0	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0063	5711	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329