Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZSCAN30_chr18_35246062_35295229	0/0	t0014	2638	1	0	0	1	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0015	2638	1	1	0	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0016	2638	1	0	1	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0017	2638	1	0	0	1	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0018	2638	1	0	1	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0019	2638	1	0	0	1	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0020	2638	1	0	0	1	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0021	2638	1	1	0	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0022	2638	1	0	0	1	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0023	2638	1	1	0	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0024	2638	1	0	1	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0025	2638	1	1	0	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0026	2638	1	0	1	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0027	2638	1	1	0	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	t0028	2638	1	0	0	1	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN31_chr6_28319737_28341148	1/0	t0001	1592	115	2	26	56	7	23	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0002	1596	87	7	13	62	0	5	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0003	1592	73	34	10	26	0	3	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0004	1591	38	6	7	21	1	3	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/1	t0005	1596	37	17	5	4	4	6	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0006	1592	30	13	1	13	1	2	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0007	1591	8	6	2	0	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0008	1592	5	0	0	5	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0009	1904	5	5	0	0	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0010	1593	5	0	4	0	1	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0011	1592	3	1	2	0	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0012	1592	3	3	0	0	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0013	1591	1	0	0	1	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0014	1596	1	0	0	1	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0015	1591	1	0	0	1	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0016	1592	1	0	0	1	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0017	1592	1	0	1	0	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0018	1592	1	0	1	0	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	t0019	1596	1	0	0	1	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN32_chr16_3377085_3406004	0/1	t0001	1015	179	14	47	81	12	24	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	t0002	1015	150	65	25	41	6	13	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	t0003	1015	28	8	2	18	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	1/0	t0004	1015	27	3	7	11	0	5	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	t0005	1015	3	0	0	1	0	2	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	t0006	1015	3	3	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	t0007	1015	2	0	2	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	t0008	1015	2	2	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	t0009	1015	1	0	0	1	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	t0010	1015	1	0	0	1	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	t0011	1015	1	1	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	t0012	1015	1	0	0	0	0	1	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	t0013	1015	1	0	1	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	t0014	1015	1	0	0	0	0	1	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN4_chr19_57663935_57684152	1/1	t0001	945	118	5	25	69	0	17	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0002	946	102	17	20	47	6	12	copy fasta	ZSCAN4	chr19	57663935	57684152